Parallel Minimum Spanning Tree-based Clustering Techniques: Parallel Minimum Spanning Tree-based Clustering Techniques for Gene Expression Analysis - Softcover

Elsayad, Dina; Khalifa, Amal

 
9783659481680: Parallel Minimum Spanning Tree-based Clustering Techniques: Parallel Minimum Spanning Tree-based Clustering Techniques for Gene Expression Analysis
Softcover
ISBN 10: 3659481688 ISBN 13: 9783659481680
Verlag: LAP LAMBERT Academic Publishing, 2013

Inhaltsangabe

This book is dedicated to interested people in Bioinformatics, High performance computing, Microarrays data clustering, Gene expression analysis. The DNA Microarrays technology is a high-throughput experimental technique that can measure expression levels of hundreds of thousands of genes simultaneously. The DNA microarrays data clustering aims to organize genes that those with similar expression patterns are grouped together to identifying biologically relevant groups of genes. This book proposed three minimum spanning tree -based clustering algorithms for gene expression analysis. The performance of the proposed algorithms (iCLUMP, iCLUMP-2 and hiCLUMP) was tested on a 45 processing nodes cluster using various cancer microarrays data sets. The results showed that the order of the proposed algorithms in terms of minimum runtime and maximum speedup/efficiency is iCLUMP-2 , iCLUMP and hiCLUMP. Furthermore the quality of the cluster produced by the iCLUMP-2 algorithm is much better than those produced by the other algorithms.

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Über die Autorin bzw. den Autor

Dina Elsayad; Egyptian researcher graduated from Faculty of Computer & Information Sciences, Ain Shams University 2007, Cairo - Egypt.Has obtained her master degree in Bioinformatics and High Performance Computing in 2013.Dr. Amal Khalifa is Professor of Scientific Computing, has obtained her Phd degree in High-performance Computing in 2009.

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Verlag
LAP LAMBERT Academic Publishing
Erscheinungsdatum
2013
Sprache
Englisch
ISBN 10 
3659481688
ISBN 13 
9783659481680
Einband
Taschenbuch
Anzahl der Seiten
112
Kontakt zum Hersteller
Nicht verfügbar
Verantwortliche Person
Presses Academiques Francophones
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Brivibas gatve 197
Riga
1039
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