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Integration of large datasets for plant model organisms: A guided tour to knowledge aggregration - Softcover

Sucaet, Yves

 
9783659524608: Integration of large datasets for plant model organisms: A guided tour to knowledge aggregration
Softcover
ISBN 10: 3659524603 ISBN 13: 9783659524608
Verlag: LAP LAMBERT Academic Publishing, 2014

Inhaltsangabe

With the advent of Big Data, data integration is very important topic in the heterogeneous bioinformatics landscape. This book starts off with the current state of biological pathway databases in general, and in particular, plant pathway databases. We explore different models to interface with the various stakeholders of biological data repositories. We discuss the potential use of XML as a repository for information integration, downstream processing, and data. Having explored different alternatives, we build up our own comprehensive knowledge repository for plant metabolic networks. A public website (http://www.metnetonline.org) was built to make information available for ad-hoc users. In addition, a dedicated API (MetNetAPI: http://www.metnetonline.org/api) is provided to accommodate bioinformaticians and software developers who wish to build advanced applications on top of the warehouse. Integrated databases are only useful when they can be synchronized with their respective external sources. We’ve created a framework for a systematic approach to integration. This work thus provides a roadmap to current and future biological database projects

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Über die Autorin bzw. den Autor

Dr. Sucaet holds a Ph.D. in bioinformatics from Iowa State University. Hisresearch background is in systems and network biology. He is a co-founder of Pathomation and currently fulfills the role of Chief Technology Officer.Before that, he was at HistoGeneX in the function of Section Head, DataManagement & Bioinformatics.

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Verlag
LAP LAMBERT Academic Publishing
Erscheinungsdatum
2014
Sprache
Englisch
ISBN 10 
3659524603
ISBN 13 
9783659524608
Einband
Taschenbuch
Anzahl der Seiten
112
Kontakt zum Hersteller
Nicht verfügbar
Verantwortliche Person
Editions Muse
customerservice@vdm-vsg.de

Brivibas gatve 197
Riga
1039
Lettland