Chemical Modelling

ISBN 10: 0854042644 / ISBN 13: 9780854042647

Verlag: Springer, 2004

Beschreibung

pp. 444 9:B&W 6 x 9 in or 229 x 152 mm Case Laminate on Creme w/Gloss Lam.

Bestandsnummer des Verkäufers 5681449

Bibliografische Details

• Titel: Chemical Modelling
• Verlag: Springer
• Erscheinungsjahr: 2004
• Sprache: Englisch
• ISBN-10: 0854042644
• ISBN-13: 9780854042647
• Einband: Hardcover
• Zustand: New

Über diesen Titel

Inhaltsangabe

Chemical Modelling: Applications and Theory comprises critical literature reviews of molecular modelling, both theoretical and applied. Molecular modelling in this context refers to modelling the structure, properties and reactions of atoms, molecules & materials. Each chapter is compiled by experts in their fields and provides a selective review of recent literature, incorporating sufficient historical perspective for the non-specialist to gain an understanding. With chemical modelling covering such a wide range of subjects, this Specialist Periodical Report serves as the first port of call to any chemist, biochemist, materials scientist or molecular physicist needing to acquaint themselves with major developments in the area.

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Chemical Modelling Applications and Theory Volume 3

A Review of the Literature Published between June 2001 and May 2003

By A. Hinchliffe

The Royal Society of Chemistry

Copyright © 2004 The Royal Society of Chemistry
All rights reserved.

ISBN: 978-0-85404-264-7

Contents

Chapter 1 Calculations of the Vibration-Rotation Spectra of Small Molecules By B. T. Sutcliffe, 1, 
Chapter 2 Computer-Aided Drug Design 2001-2003 By Richard A. Lewis, 45, 
Chapter 3 Density Functional Theory By Michael Springborg, 69, 
Chapter 4 Combinatorial Enumeration in Chemistry By D. Babic, D. J. Klein, J. von Knop and N. Trinajstic, 126, 
Chapter 5 Photo-reduction and -oxidation By Andrew Gilbert, 171, 
Chapter 6 Simulation of the Liquid State By Karl P. Travis, 217, 
Chapter 7 Numerical Methods in Chemistry By T.E. Simos, 271, 
Chapter 8 Many-body Perturbation Theory and Its Application to the Molecular Structure Problem By S. Wilson, 379, 

CHAPTER 1

Calculations of the Vibration-Rotation Spectra of Small Molecules

BY B.T. SUTCLIFFE

1 Introduction

It would, I believe, be widely agreed that the modern theory of molecular spectra began with publication by Carl Eckart in 1935 of his paper Some Studies Concerning Rotating Axes and Polyatomic Molecules. It would probably also be widely agreed that the apogee of this work occurred in 1968 when James K. G. Watson2 published Simplification of the molecular vibration-rotation hamiltonian which put Eckart's classical mechanical form into a proper quantum mechanical one. This leads to the wave mechanical problem for molecular vibration-rotational motion specified by what we shall call the Eckart-Watson Hamiltonian.

This report begins with an account of the theories of molecular spectra that preceded the work of Eckart and the interpretation of spectra that followed his paper during the nineteen forties and fifties. This discussion will involve some consideration of diatomic molecules but they will not subsequently be discussed. So this article is concerned entirely with polyatomic molecules and, in particular those that become linear, only in somewhat excited states. The initial historical discussion, it is hoped, will put the computational work that began in the nineteen seventies into a proper context. During the nineteen eighties and nineties it will be seen that two strands develop in the computational study of molecular spectra. The first is an essentially perturbation theoretic approach, confined almost entirely to the Eckart formulation. The second is a variation theoretic approach which, although sometimes using the Eckart formulation, has found greatest use in formulations using Hamiltonians specifically constructed to describe particular molecules. In referring to such a class of Hamiltonians, they will be called tailor-made.

The aim of this this report is to provide an informative context in which relevant examples of computational work on the spectra of small molecules can be presented in a way that, it is hoped, is balanced, fair and comprehensible to the non-expert reader. It is not aimed to provide a comprehensive survey of the literature, since that can nowadays be done in an effective and timely fashion with the aid of facilities on the Internet. Rather it is aimed to provide representative examples of work so that the reader can gain some feeling for what has been done, what is being done and, perhaps, what might be done.

2 History

In December 1926 the US National Research Council published in its Bulletin a Report of the Committee on Radiation in Gases entitled Molecular Spectra in Gases. The members of the Committee were Edwin C. Kemble, Raymond T. Birge, Walter F. Colby, F. Wheeler Loomis and Leigh Page. The coordinating editor seems to have been Kemble who, in his Preface thanks Professor R. S. Mulliken "whose suggestions and criticisms have been numerous and invaluable".

To put this report in context. Heisenberg's first paper on "the new quantum mechanics" had appeared late in 1925, as had Dirac's first paper, too. Schrodinger's first paper on wave mechanics appeared during February of 1926 and others followed throughout the year. The report was thus written a time of real flux in the underlying theory and its theoretical aspects give testimony to a somewhat uneasy co-existence between the old and new quantum theories, with a strong overlay of classical mechanics, in the theory of molecular spectra.

In his introductory chapter Kemble says that

the foundation for the present theory of band spectra was laid in 1892 by the older Lord Rayleigh when he pointed out that if an oscillator which at rest emits and absorbs light of frequency v0 is caused to rotate with a frequency v, about an axis perpendicular to the axis of vibration, then it should emit and absorb in about equal proportions the two frequencies v0+vr and v0-vr

and he goes on to say:

As early as 1904 Drude from the study of the dispersion of various crystals was led to the conclusion that the infrared absorption spectra and emission bands of most substances, including gases, must be due to the vibrations of electrically charged atoms and molecules rather than to the oscillations of electrons inside the atoms, and in 1912 Niels Bjerrum called attention to the fact that the breadth of the as yet unresolved infrared absorption bands of gases was of the order of magnitude to be expected from the superposition of molecular rotations on molecular vibrations.

These considerations were, at the time being described here, effective only for diatomic molecules and in this case it follows from the Maxwell-Boltzmann law and the classical mechanics of a rigid rotor that a group of molecules in thermal equilibrium at the temperature T the number having rotational frequencies between vr and vr+dv, is

[MATHEMATICAL EXPRESSION NOT REPRODUCIBLE IN ASCII]

where I is the moment of inertia and k is Boltzmann's constant. The quantity dn/dv, should be proportional to the absorption coefficient for either of the two frequencies v0± vr and so the band should be a doublet with a splitting

[MATHEMATICAL EXPRESSION NOT REPRODUCIBLE IN ASCII]

By 1913, however, experimental techniques had advanced sufficiently for the predicted doublet to be observed and the calculated moments of inertia led to what Kemble justly observed, were "plausible values" for bond lengths. For example the bond length of CO was estimated to be l.14A while that of HCl was put at l.34A. A portion of the near infrared spectrum of of HCl at this level of resolution is given as Figure 30 in Chapter II 2 of ref. 8. By 1914 Bjerrum had developed a theory for CO2, that treated the vibrations of the system in terms of atoms moving in a potential with a minimum at an isosceles triangle geometry. Among the potentials that he tried were a central field one and a valence field one, this last expressed in terms of a pair of bond oscillators coupled to a bond angle bending oscillator. This was an extremely important step for it introduced a molecular model into molecular spectroscopy. The model idea was that the infrared spectrum of a molecule could be understood if the molecule was looked upon as a vibrating-rotating entity whose vibrations could be interpreted in terms of a collection of point masses moving in a potential with a minimum at a particular geometry with the whole system undergoing...