Java for Bioinformatics and Biomedical Applications

Harshawardhan Bal|Johnny Hujol

ISBN 10: 0387372350 / ISBN 13: 9780387372358

Verlag: Springer US, 2006

Beschreibung

Dieser Artikel ist ein Print on Demand Artikel und wird nach Ihrer Bestellung fuer Sie gedruckt. There are no other books that deal with the topic of J2EE for Bioinformatics or biomedical software development, and no books are available on caBIGae and associated NCI/NCICB technologies such as caCORE and caBIOThere are no other books that d.

Bestandsnummer des Verkäufers 5910232

Bibliografische Details

• Titel: Java for Bioinformatics and Biomedical Applications
• Verlag: Springer US
• Erscheinungsjahr: 2006
• Sprache: Englisch
• ISBN-10: 0387372350
• ISBN-13: 9780387372358
• Einband: Gebunden
• Zustand: New

Über diesen Titel

Inhaltsangabe

Medical science and practice have undergone fundamental changes in the last 5 years, as large-scale genome projects have resulted in the sequencing of a number of important microbial, plant and animal genomes. This book aims to combine industry standard software engineering and design principles with genomics, bioinformatics and cancer research. Rather than an exercise in learning a programming platform, the text focuses on useful analytical tools for the scientific community.

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Java for Bioinformatics and Biomedical Applications describes the work of the U.S. National Cancer Institute (NCI, National Institutes of Health, U.S. Department of Health and Human Services) and a large number of cancer centers across the U.S. under the caBIG(TM) (cancer Biomedical Informatics Grid) program, as well as standard bioinformatics applications. The goal of NCI caBIG(TM) is to create a standards based, interoperable network of individuals, applications and data to enhance the pace of cancer research. CaBIG(TM) uses J2EE and open source standards for all software development work. This book examines the tools and technologies being developed under caBIG(TM) to meet the goal of eliminating suffering and death from cancer by 2015 as formulated by the former NCI Director, Dr. Andrew von Eschenbach.In doing so, it provides a vignette into the efforts of thousands of people - molecular biologists, medical practitioners, software developers, to name a few - across the country to bring the promise of translational research to individuals with cancer.

From a software perspective, a functional approach is used to teach the Java platform and its features for enterprise-level application development. Under this approach, the various syntactical and operative elements of the language and any software libraries that have been used (for example, BioJava, Apache, etc.) are taught not in isolation but in the context of discrete definable research problems that enable the user to relate how the different parts of the language fit together in the big picture. All examples are derived from practical problems faced in biomedical/clinical data retrieval and analysis during routine bioinformatics and cancer research. Further, the book illustrates how individual bioinformatics applications (such as BLAST and Genscan) can be stitched together into a pipeline so that users can direct the output of one tool (for example, genepredictions using Genscan) to perform further analysis (say, homology searching using BLAST).